The 3D structure of the X was predicted using I-TASSER server and Structure of Kiss 1 receptor protein was obtained from SWISS-MODEL.
Molecular docking of the X and Kiss 1 receptor protein was performed using HDOCK server.
The X- Kiss 1 receptor protein complex obtained from HDOCK server were opened in Discovery Studio Visualizer. The docked poses were visually inspected to identify Key Interactions between the two proteins.
Client request for molecular docking, molecular dynamics and MMPBSA analysis services
performing molecular docking between inhibitors and protein X and visualize 2D interaction
Perform 200ns molecular dynamics simulation and MMPBSA analysis.
The aim of this study was to investigate the interactions between Hemoglobin and the nanostructures with using AutoDock Vina. The AutoDock Vina software was used for the docking simulations because it is a widely used tool for molecular docking and is known for its accuracy and speed.
The docking simulations were performed using the AutoDock Vina software. The docking box was centered on the protein structure, covering the entire protein. The grid box size was set to 80 x 70 x 80 Angstroms with a spacing of 1 Angstrom between grid points.
The docking results were analyzed using AutoDock Tools. The binding energy and other parameters such as hydrogen bonds, electrostatic interactions, and van der Waals interactions were analyzed using Discovery Studio.
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Differential Expression Analysis of Long Noncoding RNAs in ...
Molecular docking and Dynamics of antifreeze peptide and protein X
Molecular docking and Dynamics of ligand X and protein transferrin
Drug reproposing of SARS Covid 19 Spike protein
Virtual screening of in-house library with protein X
Docking of 7 azo dyes with protein X
200 ns Molecular Dynamics Simulation of protein X - M10** peptide complex
MMPBSA Analysis of protein X - M10** peptide complex
Molecular docking and dynamics Simulation of protein X - Au nanoparticle
Cross docking of 20 proteins and FDA approved drugs
Binding interaction analysis of HT-hTS with ligand X
and more than 100 completed projects ...
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